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<title>Basic Sequence Query</title>
<h1>Basic Sequence Query</h1>

This a quick sequence search interface; for more involved searches, use
"Filter Query".  This query allows you to "build" a table
of results from multiple queries, which can be Copied to Clipboard, 
Exported, or view the individual sequences with "View Selected Sequence". 
<ul>
<p>
Choose one of three search modes<sup>**</sup> and enter a string to search on.  
<ul>
<li><b>Seq ID:</b> Sequence name 
<li><b>Remark:</b> Remarks may be associated with each sequence (entered by user using "Add Remarks" of runSingleTCW)
<li><b>Read Names:</b> (1) If assembled, these are the reads within the contig. (2) Depending
on how the database was created, the original sequence names may not be the same as
the names assigned by runSingleTCW.
</ul>
Press "Add to table" to execute the search and add results to the table. 
<br>Columns can be added/removed ("Select Viewable Columns"), 
rearranged by dragging and sorted. 

<p><sup>**</sup>Seq ID, Remark and Read Names all produce separate tables. If you switch search modes, you
switch tables (you can switch back by reselecting a search mode).

<p><b>Buttons below the table:</b> 
<ul>
<li>Delete all: deletes everything in the table. If you do not want to append 
the results of a query to the existing results, you will need to specifically
delete the existing results.
<li>Unselect: if you have a sequence selected, this will unselect it.
<li>Delete selected: delete the selected sequence from the table.
<li>Keep selected: delete everything except the selected.
</ul>
You can select multiple sequences by holding down the 'shift' or 'ctrl' keys while selecting sequences.
  